Transcript: lnc-PGA5-1:2

Basic information

LNCipedia transcript ID: lnc-PGA5-1:2 
LNCipedia gene ID: lnc-PGA5-1
Location (hg38): chr11:61255708-61263227
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1926 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_482_chr11:61023179-61029269_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.7399 non-coding 
CPAT coding probability 7.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGA5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGA4-1:1
4.0 lnc-PGA5-1:2
4.1 lnc-PGA5-1:2
5.0 lnc-PGA5-1:2
5.1 lnc-MS4A18-16:1
5.2 lnc-PGA5-1:2