Transcript: lnc-PGBD5-2:1

Basic information

LNCipedia transcript ID: lnc-PGBD5-2:1 
LNCipedia gene ID: lnc-PGBD5-2
Ensembl Gene ID: ENSG00000227006
Ensembl Transcript ID: ENST00000440729
Location (hg38): chr1:230258694-230268483
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 861 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440729.1; RP5-956O18.2-001; OTTHUMT00000092100.1; NONHSAT010114
Alternative gene names: ENSG00000227006.1; RP5-956O18.2; OTTHUMG00000037755.1; AL136988.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.3701 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGBD5-2:1 yes no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGBD5-2:1
4.0 lnc-PGBD5-2:1
4.1 lnc-PGBD5-2:1
5.0 lnc-PGBD5-2:1
5.1 lnc-EXOC8-19:3
5.2 lnc-PGBD5-2:1