Transcript: lnc-PGBD5-2:2

Basic information

LNCipedia transcript ID: lnc-PGBD5-2:2 
LNCipedia gene ID: lnc-PGBD5-2
Location (hg38): chr1:230259265-230272100
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1144 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT010116
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.3701 non-coding 
CPAT coding probability 69.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PGBD5-2:2 yes no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGBD5-2:2
4.0 lnc-PGBD5-2:2
4.1 lnc-PGBD5-2:2
5.0 lnc-PGBD5-2:2
5.1 lnc-EXOC8-19:2
5.2 lnc-PGBD5-2:2