Transcript: lnc-PGD-2:7

Basic information

LNCipedia transcript ID: lnc-PGD-2:7 
LNCipedia gene ID: lnc-PGD-2
Ensembl Gene ID: ENSG00000284642
Ensembl Transcript ID: ENST00000641335
Location (hg38): chr1:10395618-10397432
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1369 bp
Exons: 2
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641335.1
Alternative gene names: ENSG00000284642.1; AL139424.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.9303 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGD-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-KIF1B-2:2
5.1 lnc-KIF1B-2:2
5.2 lnc-PGD-2:7