Transcript: lnc-PGGHG-1:5

Basic information

LNCipedia transcript ID: lnc-PGGHG-1:5 
LNCipedia gene ID: lnc-PGGHG-1
Location (hg38): chr11:287702-288773
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 749 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019179; NONHSAT017221
Alternative gene names: XLOC_009013; linc-ATHL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.3437 non-coding 
CPAT coding probability 14.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGGHG-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATHL1-1:1
3.1 lnc-ATHL1-1:2
4.0 lnc-ATHL1-1:2
4.1 lnc-ATHL1-1:2
5.0 lnc-ATHL1-1:2
5.1 lnc-OR51M1-141:5
5.2 lnc-PGGHG-1:5