Transcript: lnc-PGM5-1:3

Basic information

LNCipedia transcript ID: lnc-PGM5-1:3 
LNCipedia gene ID: lnc-PGM5-1
Ensembl Gene ID: ENSG00000226337
Ensembl Transcript ID: ENST00000413269
Location (hg38): chr9:68541036-68644442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1739 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413269.3
Alternative gene names: ENSG00000226337.3; RP11-274B18.4; AL353616.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.4249 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGM5-1:3
4.0 lnc-PGM5-1:3
4.1 lnc-PGM5-1:3
5.0 lnc-PGM5-1:3
5.1 lnc-ZNF658-29:3
5.2 lnc-PGM5-1:3