Transcript: lnc-PGM5-2:10

Basic information

LNCipedia transcript ID: lnc-PGM5-2:10 
LNCipedia gene ID: lnc-PGM5-2
Location (hg38): chr9:68326874-68330294
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 361 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016604; NONHSAT131735
Alternative gene names: XLOC_007390; linc-PGM5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2777 non-coding 
CPAT coding probability 9.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-2:10 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L3-2:4
3.1 lnc-FOXD4L3-2:4
4.0 lnc-FOXD4L3-2:4
4.1 lnc-FOXD4L3-2:4
5.0 lnc-FOXD4L3-2:4
5.1 lnc-ZNF658-21:9
5.2 lnc-PGM5-2:10