Transcript: lnc-PGM5-2:12

Basic information

LNCipedia transcript ID: lnc-PGM5-2:12 
LNCipedia gene ID: lnc-PGM5-2
Location (hg38): chr9:68328484-68330428
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 579 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015688; ENST00000429953; ENST00000429953.1; RP11-561O23.5-001; OTTHUMT00000052541.1; NONHSAT131737
Alternative gene names: XLOC_007390; linc-PGM5-1; ENSG00000234394; RP11-561O23.5; ENSG00000234394.1; OTTHUMG00000019961.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.894 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-2:12 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L3-2:6
3.1 lnc-FOXD4L3-2:6
4.0 lnc-FOXD4L3-2:6
4.1 lnc-FOXD4L3-2:6
5.0 lnc-FOXD4L3-2:6
5.1 lnc-ZNF658-21:11
5.2 lnc-PGM5-2:12