Transcript: lnc-PGM5-2:13

Basic information

LNCipedia transcript ID: lnc-PGM5-2:13 
LNCipedia gene ID: lnc-PGM5-2
Location (hg38): chr9:68328580-68330631
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 617 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00015689; ENST00000414223; ENST00000414223.1; RP11-561O23.5-002; OTTHUMT00000052542.1
Alternative gene names: XLOC_007390; linc-PGM5-1; ENSG00000234394; RP11-561O23.5; ENSG00000234394.1; OTTHUMG00000019961.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.2161 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-2:13 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L3-2:7
3.1 lnc-FOXD4L3-2:7
4.0 lnc-FOXD4L3-2:7
4.1 lnc-FOXD4L3-2:7
5.0 lnc-FOXD4L3-2:7
5.1 lnc-ZNF658-21:12
5.2 lnc-PGM5-2:13