Transcript: lnc-PGM5-2:2

Basic information

LNCipedia transcript ID: lnc-PGM5-2:2 
LNCipedia gene ID: lnc-PGM5-2
Location (hg38): chr9:68306528-68330436
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2060 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT131727; ENST00000603050.1
Alternative gene names: ENSG00000234394.4; RP11-561O23.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.13 non-coding 
CPAT coding probability 8.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-2:2 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXD4L3-2:8
4.0 lnc-FOXD4L3-2:8
4.1 lnc-FOXD4L3-2:8
5.0 lnc-FOXD4L3-2:8
5.1 lnc-ZNF658-21:1
5.2 lnc-PGM5-2:2