Transcript: lnc-PGM5-2:3

Basic information

LNCipedia transcript ID: lnc-PGM5-2:3 
LNCipedia gene ID: lnc-PGM5-2
Ensembl Gene ID: ENSG00000234394
Ensembl Transcript ID: ENST00000603200
Location (hg38): chr9:68306528-68330436
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2211 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000603200.5
Alternative gene names: ENSG00000234394.8; RP11-561O23.5; AL353608.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.13 non-coding 
CPAT coding probability 8.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGM5-2:3 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FOXD4L3-2:12
4.1 lnc-FOXD4L3-2:12
5.0 lnc-FOXD4L3-2:12
5.1 lnc-ZNF658-21:2
5.2 lnc-PGM5-2:3