Transcript: lnc-PGM5-2:4

Basic information

LNCipedia transcript ID: lnc-PGM5-2:4 
LNCipedia gene ID: lnc-PGM5-2
Location (hg38): chr9:68322411-68330453
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4464 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT131729
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 69.0129 coding 
CPAT coding probability 27.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PGM5-2:4 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXD4L3-2:9
4.0 lnc-FOXD4L3-2:9
4.1 lnc-FOXD4L3-2:9
5.0 lnc-FOXD4L3-2:9
5.1 lnc-ZNF658-21:3
5.2 lnc-PGM5-2:4