Transcript: lnc-PGM5-2:5

Basic information

LNCipedia transcript ID: lnc-PGM5-2:5 
LNCipedia gene ID: lnc-PGM5-2
Ensembl Gene ID: ENSG00000234394
Ensembl Transcript ID: ENST00000429953
Location (hg38): chr9:68322411-68330453
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4384 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT131730; ENST00000429953.2; ENST00000429953.6
Alternative gene names: ENSG00000234394.4; RP11-561O23.5; ENSG00000234394.8; AL353608.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.4602 coding 
CPAT coding probability 22.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PGM5-2:5 yes no no no

Available literature

  1. Qin (2014), Expression pattern of long non-coding RNAs in renal cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXD4L3-2:10
4.0 lnc-FOXD4L3-2:10
4.1 lnc-FOXD4L3-2:10
5.0 lnc-FOXD4L3-2:10
5.1 lnc-ZNF658-21:4
5.2 lnc-PGM5-2:5