Transcript: lnc-PGPEP1L-11:2

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-11:2 
LNCipedia gene ID: lnc-PGPEP1L-11
Ensembl Gene ID: ENSG00000259478
Ensembl Transcript ID: ENST00000561121
Location (hg38): chr15:97982509-97991142
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1963 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561121.1; RP11-753A21.1-001; OTTHUMT00000416597.1; NONHSAT050747
Alternative gene names: ENSG00000259478.1; RP11-753A21.1; OTTHUMG00000172045.1; ENSG00000259478.2; AC024651.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.2127 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-82I10.1.1-3:2
4.0 lnc-RP11-82I10.1.1-3:2
4.1 lnc-RP11-82I10.1.1-3:2
5.0 lnc-RP11-82I10.1.1-3:2
5.1 lnc-CIB1-78:2
5.2 lnc-PGPEP1L-11:2