Transcript: lnc-PGPEP1L-15:2

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-15:2 
LNCipedia gene ID: lnc-PGPEP1L-15
Location (hg38): chr15:97272193-97319266
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00023816
Alternative gene names: XLOC_011596; linc-RGMA-10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.6696 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-15:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-82I10.1.1-7:1
3.1 lnc-RP11-82I10.1.1-11:2
4.0 lnc-RP11-82I10.1.1-11:2
4.1 lnc-RP11-82I10.1.1-11:2
5.0 lnc-RP11-82I10.1.1-11:2
5.1 lnc-CIB1-73:2
5.2 lnc-PGPEP1L-15:2