Transcript: lnc-PGPEP1L-1:1

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-1:1 
LNCipedia gene ID: lnc-PGPEP1L-1
Ensembl Gene ID: ENSG00000259475
Ensembl Transcript ID: ENST00000559468
Location (hg38): chr15:98954149-99105824
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 588 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559468.1; RP11-654A16.3-001; OTTHUMT00000415701.1; NONHSAT050799
Alternative gene names: ENSG00000259475.1; RP11-654A16.3; OTTHUMG00000171895.1; AC036108.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.5263 non-coding 
CPAT coding probability 23.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-1:1 no no no no

Available literature

  1. Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGPEP1L-1:1
4.0 lnc-PGPEP1L-1:1
4.1 lnc-PGPEP1L-1:1
5.0 lnc-PGPEP1L-1:1
5.1 lnc-CIB1-85:1
5.2 lnc-PGPEP1L-1:1