Transcript: lnc-PGPEP1L-1:2

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-1:2 
LNCipedia gene ID: lnc-PGPEP1L-1
Location (hg38): chr15:99095525-99100837
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 272 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024220; NONHSAT050829
Alternative gene names: XLOC_011607; linc-PGPEP1L


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -460.1798 non-coding 
CPAT coding probability 8.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-1:2 no no no no

Available literature

  1. Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC23-1:1
3.1 lnc-PGPEP1L-1:2
4.0 lnc-PGPEP1L-1:2
4.1 lnc-PGPEP1L-1:2
5.0 lnc-PGPEP1L-1:2
5.1 lnc-CIB1-85:2
5.2 lnc-PGPEP1L-1:2