Transcript: lnc-PGPEP1L-25:4

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-25:4 
LNCipedia gene ID: lnc-PGPEP1L-25
Ensembl Gene ID: ENSG00000259542
Ensembl Transcript ID: ENST00000560242
Location (hg38): chr15:96393174-96396186
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560242.1; RP11-522B15.4-001; OTTHUMT00000415394.1; NONHSAT050253; ENST00000560242.5
Alternative gene names: ENSG00000259542.1; RP11-522B15.4; OTTHUMG00000171848.1; ENSG00000259542.5; AC087477.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.6193 non-coding 
CPAT coding probability 5.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-25:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016251.1-3:4
4.0 lnc-AC016251.1-3:4
4.1 lnc-AC016251.1-3:4
5.0 lnc-AC016251.1-3:4
5.1 lnc-CIB1-64:4
5.2 lnc-PGPEP1L-25:4