Transcript: lnc-PGPEP1L-2:1

Basic information

LNCipedia transcript ID: lnc-PGPEP1L-2:1 
LNCipedia gene ID: lnc-PGPEP1L-2
Ensembl Gene ID: ENSG00000259621
Ensembl Transcript ID: ENST00000558736
Location (hg38): chr15:98880659-98893535
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 263 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558736.1; RP11-654A16.1-001; OTTHUMT00000415590.1; NONHSAT050782
Alternative gene names: ENSG00000259621.1; RP11-654A16.1; OTTHUMG00000171879.1; AC069029.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2399 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGPEP1L-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGPEP1L-2:1
4.0 lnc-PGPEP1L-2:1
4.1 lnc-PGPEP1L-2:1
5.0 lnc-PGPEP1L-2:1
5.1 lnc-CIB1-84:1
5.2 lnc-PGPEP1L-2:1