Transcript: lnc-PGS1-1:7

Basic information

LNCipedia transcript ID: lnc-PGS1-1:7 
LNCipedia gene ID: lnc-PGS1-1
RefSeq ID: NR_110845
Location (hg38): chr17:78360448-78364931
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 896 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110845; NR_110845.1
Alternative gene names: LOC101928674


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -142.5392 non-coding 
CPAT coding probability 20.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGS1-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PGS1-1:7
4.0 lnc-PGS1-1:7
4.1 lnc-PGS1-1:7
5.0 lnc-PGS1-1:7
5.1 lnc-ZACN-52:14
5.2 lnc-PGS1-1:7