Transcript: lnc-PGS1-2:1

Basic information

LNCipedia transcript ID: lnc-PGS1-2:1 
LNCipedia gene ID: lnc-PGS1-2
Ensembl Gene ID: ENSG00000267737
Ensembl Transcript ID: ENST00000586321
Location (hg38): chr17:78315729-78347798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 799 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025201; NONHSAT056217; ENST00000586321.1
Alternative gene names: XLOC_012323; linc-PGS1-2; ENSG00000267737.1; AC061992.2; AC087645.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.9774 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PGS1-2:1
3.1 lnc-PGS1-2:1
4.0 lnc-PGS1-2:1
4.1 lnc-PGS1-2:1
5.0 lnc-PGS1-2:1
5.1 lnc-ZACN-50:5
5.2 lnc-PGS1-2:1