Transcript: lnc-PHACTR4-1:2

Basic information

LNCipedia transcript ID: lnc-PHACTR4-1:2 
LNCipedia gene ID: lnc-PHACTR4-1
Location (hg38): chr1:28481937-28502771
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1862 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000496998
Alternative gene names: ENSG00000245460


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.573 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PHACTR4-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHACTR4-1:2
3.1 lnc-PHACTR4-1:2
4.0 lnc-PHACTR4-1:2
4.1 lnc-PHACTR4-1:2
5.0 lnc-PHACTR4-1:2
5.1 lnc-PHACTR4-1:2
5.2 lnc-PHACTR4-1:2