Transcript: lnc-PHF14-14:12

Basic information

LNCipedia transcript ID: lnc-PHF14-14:12 
LNCipedia gene ID: lnc-PHF14-14
Ensembl Gene ID: ENSG00000230333
Ensembl Transcript ID: ENST00000445839
Location (hg38): chr7:11252980-11520175
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 565 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445839.1; AC004538.3-006; OTTHUMT00000325943.1; NONHSAT119213; ENST00000445839.5
Alternative gene names: ENSG00000230333.1; AC004538.3; OTTHUMG00000152311.2; ENSG00000230333.2; ENSG00000230333.6; AC004160.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -195.3224 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHF14-14:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHF14-1:5
4.0 lnc-PHF14-14:12
4.1 lnc-PHF14-14:12
5.0 lnc-PHF14-14:12
5.1 lnc-AHR-71:16
5.2 lnc-PHF14-14:12