Transcript: lnc-PHF14-3:2

Basic information

LNCipedia transcript ID: lnc-PHF14-3:2 
LNCipedia gene ID: lnc-PHF14-3
Ensembl Gene ID: ENSG00000236414
Ensembl Transcript ID: ENST00000422697
Location (hg38): chr7:10702676-10707406
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012950; ENST00000422697; ENST00000422697.1; AC004535.2-001; OTTHUMT00000324429.1
Alternative gene names: XLOC_005985; linc-PHF14-1; ENSG00000236414; AC004535.2; ENSG00000236414.1; OTTHUMG00000151923.1; AC004415.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -742.7283 non-coding 
CPAT coding probability 5.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHF14-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHF14-1:2
3.1 lnc-PHF14-3:2
4.0 lnc-PHF14-3:2
4.1 lnc-PHF14-3:2
5.0 lnc-PHF14-3:2
5.1 lnc-SLC29A4-61:3
5.2 lnc-PHF14-3:2