Transcript: lnc-PHIP-1:1

Basic information

LNCipedia transcript ID: lnc-PHIP-1:1 
LNCipedia gene ID: lnc-PHIP-1
Ensembl Gene ID: ENSG00000229495
Ensembl Transcript ID: ENST00000430931
Location (hg38): chr6:78809715-78813303
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2632 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011522; ENST00000430931; ENST00000430931.1; RP11-173D14.3-001; OTTHUMT00000041295.1; NONHSAT113672
Alternative gene names: XLOC_005771; linc-HTR1B-1; ENSG00000229495; RP11-173D14.3; ENSG00000229495.1; OTTHUMG00000015069.1; AL450327.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.0332 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHIP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHIP-1:1
3.1 lnc-PHIP-1:1
4.0 lnc-PHIP-1:1
4.1 lnc-PHIP-1:1
5.0 lnc-PHIP-1:1
5.1 lnc-CEP162-50:1
5.2 lnc-PHIP-1:1