Transcript: lnc-PHLDB1-1:1

Basic information

LNCipedia transcript ID: lnc-PHLDB1-1:1 
LNCipedia gene ID: lnc-PHLDB1-1
Ensembl Gene ID: ENSG00000255422
Ensembl Transcript ID: ENST00000526274
Location (hg38): chr11:118704607-118750263
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 425 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526274.1; AP002954.4-001; OTTHUMT00000389307.1; NONHSAT024509
Alternative gene names: ENSG00000255422.1; AP002954.4; OTTHUMG00000166343.1; AP002954.1; ENSG00000255422.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 41.4962 non-coding 
CPAT coding probability 12.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PHLDB1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHLDB1-1:1
4.0 lnc-PHLDB1-1:1
4.1 lnc-PHLDB1-1:1
5.0 lnc-PHLDB1-1:1
5.1 lnc-HMBS-16:5
5.2 lnc-PHLDB1-1:1