Transcript: lnc-PHTF2-1:3

Basic information

LNCipedia transcript ID: lnc-PHTF2-1:3 
LNCipedia gene ID: lnc-PHTF2-1
Ensembl Gene ID: ENSG00000232756
Ensembl Transcript ID: ENST00000438324
Location (hg38): chr7:77990420-77995171
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013025; ENST00000438324.1; RP5-1185I7.1-003; OTTHUMT00000344346.1; NONHSAT121684
Alternative gene names: XLOC_006154; linc-GNAI1-2; ENSG00000232756.1; RP5-1185I7.1; OTTHUMG00000156495.1; AC004990.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.0398 non-coding 
CPAT coding probability 6.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHTF2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHTF2-1:3
3.1 lnc-PHTF2-1:3
4.0 lnc-PHTF2-1:3
4.1 lnc-PHTF2-1:3
5.0 lnc-PHTF2-1:3
5.1 lnc-FKBP6-108:3
5.2 lnc-PHTF2-1:3