Transcript: lnc-PIEZO2-6:2

Basic information

LNCipedia transcript ID: lnc-PIEZO2-6:2 
LNCipedia gene ID: lnc-PIEZO2-6
Ensembl Gene ID: ENSG00000264876
Ensembl Transcript ID: ENST00000582531
Location (hg38): chr18:10323132-10372380
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 928 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582531.1; RP11-138E9.2-001; OTTHUMT00000442259.1; NONHSAT057258
Alternative gene names: ENSG00000264876.1; RP11-138E9.2; OTTHUMG00000178510.1; AP005209.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.5343 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIEZO2-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIEZO2-6:2
4.0 lnc-PIEZO2-6:2
4.1 lnc-PIEZO2-6:2
5.0 lnc-PIEZO2-6:2
5.1 lnc-SMAD2-298:4
5.2 lnc-PIEZO2-6:2