Transcript: lnc-PIGBOS1-1:6

Basic information

LNCipedia transcript ID: lnc-PIGBOS1-1:6 
LNCipedia gene ID: lnc-PIGBOS1-1
Location (hg38): chr15:55317704-55319107
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 371 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565225.1; RP11-139H15.1-003; OTTHUMT00000419685.1; NONHSAT043989
Alternative gene names: ENSG00000225973.3; RP11-139H15.1; OTTHUMG00000172653.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIGBOS1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCPG1-1:2
4.0 lnc-RAB27A-1:6
4.1 lnc-RAB27A-1:6
5.0 lnc-RAB27A-1:6
5.1 lnc-DNAAF4-8:6
5.2 lnc-PIGBOS1-1:6