Transcript: lnc-PIK3R1-2:1

Basic information

LNCipedia transcript ID: lnc-PIK3R1-2:1 
LNCipedia gene ID: lnc-PIK3R1-2
Location (hg38): chr5:68374765-68375127
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 363 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000503685; ENST00000503685.1; CTD-2582M21.1-001; OTTHUMT00000369117.1; NONHSAT101838
Alternative gene names: ENSG00000251044; CTD-2582M21.1; ENSG00000251044.1; OTTHUMG00000162485.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -316.0466 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIK3R1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIK3R1-1:1
3.1 lnc-PIK3R1-2:1
4.0 lnc-PIK3R1-2:1
4.1 lnc-PIK3R1-2:1
5.0 lnc-PIK3R1-2:1
5.1 lnc-NLN-40:1
5.2 lnc-PIK3R1-2:1