Transcript: lnc-PIK3R1-2:2

Basic information

LNCipedia transcript ID: lnc-PIK3R1-2:2 
LNCipedia gene ID: lnc-PIK3R1-2
Ensembl Gene ID: ENSG00000251044
Ensembl Transcript ID: ENST00000503685
Location (hg38): chr5:68374765-68375292
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 371 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503685.2
Alternative gene names: ENSG00000251044.2; CTD-2582M21.1; AC024579.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -316.0466 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIK3R1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PIK3R1-2:2
4.1 lnc-PIK3R1-2:2
5.0 lnc-PIK3R1-2:2
5.1 lnc-NLN-40:2
5.2 lnc-PIK3R1-2:2