Transcript: lnc-PIK3R1-4:1

Basic information

LNCipedia transcript ID: lnc-PIK3R1-4:1 
LNCipedia gene ID: lnc-PIK3R1-4
Ensembl Gene ID: ENSG00000249588
Ensembl Transcript ID: ENST00000515504
Location (hg38): chr5:68523878-68530007
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009413; ENST00000515504; ENST00000515504.1; CTC-537E7.1-001; OTTHUMT00000368580.1; NONHSAT101851
Alternative gene names: XLOC_004414; linc-SLC30A5-4; ENSG00000249588; CTC-537E7.1; ENSG00000249588.1; OTTHUMG00000162331.1; AC010280.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.6854 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIK3R1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIK3R1-3:1
3.1 lnc-PIK3R1-4:1
4.0 lnc-PIK3R1-4:1
4.1 lnc-PIK3R1-4:1
5.0 lnc-PIK3R1-4:1
5.1 lnc-NLN-43:2
5.2 lnc-PIK3R1-4:1