Transcript: lnc-PINK1-1:1

Basic information

LNCipedia transcript ID: lnc-PINK1-1:1 
LNCipedia gene ID: lnc-PINK1-1
Ensembl Gene ID: ENSG00000233069
Ensembl Transcript ID: ENST00000436642
Location (hg38): chr1:20732880-20733952
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 299 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436642.1; RP5-930J4.2-001; OTTHUMT00000007456.1; NONHSAT001386
Alternative gene names: ENSG00000233069.1; RP5-930J4.2; OTTHUMG00000002621.1; AL663074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.7478 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PINK1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PINK1-1:1
4.0 lnc-PINK1-1:1
4.1 lnc-PINK1-1:1
5.0 lnc-PINK1-1:1
5.1 lnc-NBPF3-17:1
5.2 lnc-PINK1-1:1