Transcript: lnc-PINX1-6:3

Basic information

LNCipedia transcript ID: lnc-PINX1-6:3 
LNCipedia gene ID: lnc-PINX1-6
Ensembl Gene ID: ENSG00000254839
Ensembl Transcript ID: ENST00000532453
Location (hg38): chr8:11062647-11067089
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 639 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532453.1; AF131215.6-001; OTTHUMT00000383951.1; NONHSAT125032
Alternative gene names: ENSG00000254839.1; AF131215.6; OTTHUMG00000165422.1; AF131215.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.1497 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PINX1-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AF131215.6.1-1:1
4.0 lnc-AF131215.6.1-1:1
4.1 lnc-AF131215.6.1-1:1
5.0 lnc-AF131215.6.1-1:1
5.1 lnc-PINX1-6:1
5.2 lnc-PINX1-6:3