Transcript: lnc-PINX1-85:2

Basic information

LNCipedia transcript ID: lnc-PINX1-85:2 
LNCipedia gene ID: lnc-PINX1-85
Ensembl Gene ID: ENSG00000254936
Ensembl Transcript ID: ENST00000526648
Location (hg38): chr8:11123381-11126064
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1741 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526648.2; AF131215.3-001; OTTHUMT00000383955.2; NONHSAT125038
Alternative gene names: ENSG00000254936.3; AF131215.3; OTTHUMG00000165425.2; ENSG00000254936.4; AF131215.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.9651 non-coding 
CPAT coding probability 13.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PINX1-85:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AF131215.3.1-1:2
4.0 lnc-AF131215.3.1-1:2
4.1 lnc-AF131215.3.1-1:2
5.0 lnc-AF131215.3.1-1:2
5.1 lnc-PINX1-10:2
5.2 lnc-PINX1-85:2