Transcript: lnc-PIPOX-5:5

Basic information

LNCipedia transcript ID: lnc-PIPOX-5:5 
LNCipedia gene ID: lnc-PIPOX-5
Ensembl Gene ID: ENSG00000265908
Ensembl Transcript ID: ENST00000579154
Location (hg38): chr17:28944796-28945394
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 599 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579154.1; RP11-20B24.6-001; OTTHUMT00000446752.1; NONHSAT052675
Alternative gene names: ENSG00000265908.1; RP11-20B24.6; OTTHUMG00000179500.1; AC024267.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.3687 non-coding 
CPAT coding probability 1.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIPOX-5:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERAL1-5:1
4.0 lnc-ERAL1-5:1
4.1 lnc-ERAL1-5:1
5.0 lnc-ERAL1-5:1
5.1 lnc-PIPOX-5:4
5.2 lnc-PIPOX-5:5