Transcript: lnc-PITRM1-10:2

Basic information

LNCipedia transcript ID: lnc-PITRM1-10:2 
LNCipedia gene ID: lnc-PITRM1-10
Location (hg38): chr10:3032893-3047038
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 251 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000117056.1|FTMT23700039459.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -65.1526 non-coding 
CPAT coding probability 6.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITRM1-10:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PITRM1-10:2
5.0 lnc-PITRM1-10:2
5.1 lnc-KLF6-35:2
5.2 lnc-PITRM1-10:2