Transcript: lnc-PITRM1-7:3

Basic information

LNCipedia transcript ID: lnc-PITRM1-7:3 
LNCipedia gene ID: lnc-PITRM1-7
Location (hg38): chr10:2489868-2502149
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 882 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018867; NONHSAT010975
Alternative gene names: XLOC_008688; linc-ADARB2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.7424 non-coding 
CPAT coding probability 98.29% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PITRM1-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITRM1-7:3
3.1 lnc-PITRM1-7:3
4.0 lnc-PITRM1-7:3
4.1 lnc-PITRM1-7:3
5.0 lnc-PITRM1-7:3
5.1 lnc-KLF6-40:3
5.2 lnc-PITRM1-7:3