Transcript: lnc-PIWIL4-1:19

Basic information

LNCipedia transcript ID: lnc-PIWIL4-1:19 
LNCipedia gene ID: lnc-PIWIL4-1
Ensembl Gene ID: ENSG00000255666
Ensembl Transcript ID: ENST00000542479
Location (hg38): chr11:94647479-94651629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 532 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542479; ENST00000542479.1; RP11-867G2.6-004; OTTHUMT00000396385.1; NONHSAT023737
Alternative gene names: ENSG00000255666; RP11-867G2.6; ENSG00000255666.1; OTTHUMG00000167810.1; ENSG00000255666.5; AP000943.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.2911 non-coding 
CPAT coding probability 7.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIWIL4-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIWIL4-2:4
3.1 lnc-PIWIL4-2:4
4.0 lnc-PIWIL4-2:4
4.1 lnc-PIWIL4-1:19
5.0 lnc-PIWIL4-1:19
5.1 lnc-TRIM49C-39:19
5.2 lnc-PIWIL4-1:19