Transcript: lnc-PIWIL4-1:3

Basic information

LNCipedia transcript ID: lnc-PIWIL4-1:3 
LNCipedia gene ID: lnc-PIWIL4-1
Ensembl Gene ID: ENSG00000233536
Ensembl Transcript ID: ENST00000438416
Location (hg38): chr11:94638038-94640833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 712 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438416; ENST00000438416.2; RP11-867G2.5-001; OTTHUMT00000396381.1; NONHSAT023732
Alternative gene names: ENSG00000233536; RP11-867G2.5; ENSG00000233536.2; OTTHUMG00000167809.1; AP000943.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.7249 non-coding 
CPAT coding probability 11.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIWIL4-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIWIL4-1:3
3.1 lnc-PIWIL4-1:3
4.0 lnc-PIWIL4-1:3
4.1 lnc-PIWIL4-1:3
5.0 lnc-PIWIL4-1:3
5.1 lnc-TRIM49C-39:3
5.2 lnc-PIWIL4-1:3