Transcript: lnc-PKN3-1:1

Basic information

LNCipedia transcript ID: lnc-PKN3-1:1 
LNCipedia gene ID: lnc-PKN3-1
Ensembl Gene ID: ENSG00000223478
Ensembl Transcript ID: ENST00000443631
Location (hg38): chr9:128724445-128733194
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 544 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443631.1; RP11-545E17.3-001; OTTHUMT00000054490.1
Alternative gene names: ENSG00000223478.1; RP11-545E17.3; OTTHUMG00000020758.1; AL441992.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -308.084 non-coding 
CPAT coding probability 19.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PKN3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PKN3-1:1
4.0 lnc-PKN3-1:1
4.1 lnc-PKN3-1:1
5.0 lnc-PKN3-1:1
5.1 lnc-PTPA-22:1
5.2 lnc-PKN3-1:1