Transcript: lnc-PKN3-2:1

Basic information

LNCipedia transcript ID: lnc-PKN3-2:1 
LNCipedia gene ID: lnc-PKN3-2
Location (hg38): chr9:128686341-128687635
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 668 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000427246.1; RP11-216B9.8-001; OTTHUMT00000326979.1; NONHSAT134983
Alternative gene names: ENSG00000226602.1; RP11-216B9.8; OTTHUMG00000152601.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.6843 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PKN3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PKN3-2:1
4.0 lnc-PKN3-2:1
4.1 lnc-PKN3-2:1
5.0 lnc-PKN3-2:1
5.1 lnc-PTPA-26:1
5.2 lnc-PKN3-2:1