Transcript: lnc-PKNOX2-2:1

Basic information

LNCipedia transcript ID: lnc-PKNOX2-2:1 
LNCipedia gene ID: lnc-PKNOX2-2
Ensembl Gene ID: ENSG00000255537
Ensembl Transcript ID: ENST00000527818
Location (hg38): chr11:125495214-125499528
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3423 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527818.1
Alternative gene names: ENSG00000255537.1; AP000708.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 34.9477 non-coding 
CPAT coding probability 81.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PKNOX2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AP000708.1.1-2:1
4.1 lnc-AP000708.1.1-2:1
5.0 lnc-AP000708.1.1-2:1
5.1 lnc-HINFP-85:1
5.2 lnc-PKNOX2-2:1