Transcript: lnc-PKP4-3:2

Basic information

LNCipedia transcript ID: lnc-PKP4-3:2 
LNCipedia gene ID: lnc-PKP4-3
Location (hg38): chr2:158682526-158684014
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 393 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_17525_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -580.5596 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PKP4-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PKP4-3:2
4.0 lnc-PKP4-3:2
4.1 lnc-PKP4-3:2
5.0 lnc-PKP4-3:2
5.1 lnc-TANC1-3:3
5.2 lnc-PKP4-3:2