Transcript: lnc-PLA2G4A-5:1

Basic information

LNCipedia transcript ID: lnc-PLA2G4A-5:1 
LNCipedia gene ID: lnc-PLA2G4A-5
Ensembl Gene ID: ENSG00000225006
Ensembl Transcript ID: ENST00000426262
Location (hg38): chr1:188508538-188536465
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000353; ENST00000426262; ENST00000426262.1; RP11-669M2.1-001; OTTHUMT00000086449.1; NONHSAT008475
Alternative gene names: XLOC_000500; linc-RGS18-8; ENSG00000225006; RP11-669M2.1; ENSG00000225006.1; OTTHUMG00000035627.1; AL929288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.9139 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLA2G4A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLA2G4A-4:1
3.1 lnc-PLA2G4A-5:1
4.0 lnc-PLA2G4A-5:1
4.1 lnc-PLA2G4A-5:1
5.0 lnc-PLA2G4A-5:1
5.1 lnc-C1orf21-50:1
5.2 lnc-PLA2G4A-5:1