Transcript: lnc-PLA2G7-1:1

Basic information

LNCipedia transcript ID: lnc-PLA2G7-1:1 
LNCipedia gene ID: lnc-PLA2G7-1
Ensembl Gene ID: ENSG00000236164
Ensembl Transcript ID: ENST00000438738
Location (hg38): chr6:46758296-46761158
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 761 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438738; ENST00000438738.1; RP11-268F1.3-001; OTTHUMT00000040805.1; NONHSAT113019
Alternative gene names: ENSG00000236164; RP11-268F1.3; ENSG00000236164.1; OTTHUMG00000014792.1; AL161618.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.3282 non-coding 
CPAT coding probability 14.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLA2G7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLA2G7-1:1
3.1 lnc-PLA2G7-1:1
4.0 lnc-PLA2G7-1:1
4.1 lnc-PLA2G7-1:1
5.0 lnc-PLA2G7-1:1
5.1 lnc-NFKBIE-47:1
5.2 lnc-PLA2G7-1:1