Transcript: lnc-PLA2G7-2:3

Basic information

LNCipedia transcript ID: lnc-PLA2G7-2:3 
LNCipedia gene ID: lnc-PLA2G7-2
Ensembl Gene ID: ENSG00000242973
Ensembl Transcript ID: ENST00000571590
Location (hg38): chr6:46670444-46687800
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 268 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571590.1; RP11-446F17.3-003; OTTHUMT00000438109.1; NONHSAT113014; ENST00000571590.5
Alternative gene names: ENSG00000242973.2; RP11-446F17.3; OTTHUMG00000014787.2; ENSG00000242973.6; AL591242.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLA2G7-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLA2G7-2:3
4.0 lnc-PLA2G7-2:3
4.1 lnc-PLA2G7-2:3
5.0 lnc-PLA2G7-2:3
5.1 lnc-NFKBIE-46:4
5.2 lnc-PLA2G7-2:3