Transcript: lnc-PLAT-1:8

Basic information

LNCipedia transcript ID: lnc-PLAT-1:8 
LNCipedia gene ID: lnc-PLAT-1
Ensembl Gene ID: ENSG00000271938
Ensembl Transcript ID: ENST00000605981
Location (hg38): chr8:42139461-42139752
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000605981.1
Alternative gene names: ENSG00000271938.1; RP11-589C21.6; AC103724.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.7372 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLAT-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLAT-5:1
4.0 lnc-PLAT-5:1
4.1 lnc-PLAT-1:8
5.0 lnc-PLAT-1:8
5.1 lnc-SFRP1-16:8
5.2 lnc-PLAT-1:8