Transcript: lnc-PLAT-3:6

Basic information

LNCipedia transcript ID: lnc-PLAT-3:6 
LNCipedia gene ID: lnc-PLAT-3
Ensembl Gene ID: ENSG00000253408
Ensembl Transcript ID: ENST00000521470
Location (hg38): chr8:42249052-42263406
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521470.1; RP11-231D20.2-006; OTTHUMT00000377112.1; NONHSAT126276
Alternative gene names: ENSG00000253408.1; RP11-231D20.2; OTTHUMG00000164073.1; ENSG00000253408.5; AC083973.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.0764 non-coding 
CPAT coding probability 11.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLAT-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLAT-3:6
4.0 lnc-PLAT-3:6
4.1 lnc-PLAT-3:6
5.0 lnc-PLAT-3:6
5.1 lnc-SFRP1-20:20
5.2 lnc-PLAT-3:6