Transcript: lnc-PLCB1-1:2

Basic information

LNCipedia transcript ID: lnc-PLCB1-1:2 
LNCipedia gene ID: lnc-PLCB1-1
Ensembl Gene ID: ENSG00000229766
Ensembl Transcript ID: ENST00000607924
Location (hg38): chr20:8019223-8027725
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 473 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607924.1; ENST00000607924.5
Alternative gene names: ENSG00000229766.2; RP5-971N18.3; ENSG00000229766.6; AL021396.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -424.4124 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLCB1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCB1-1:2
4.0 lnc-PLCB1-1:2
4.1 lnc-PLCB1-1:2
5.0 lnc-PLCB1-1:2
5.1 lnc-LAMP5-7:3
5.2 lnc-PLCB1-1:2